Reference

Model inputs
treatments	Treatments
nma.acr.naive nma.das28.naive nma.haq.naive	NMA estimates
acr2das28	Change in DAS28 by 6-month ACR response
acr2sdai	Change in SDAI by 6-month ACR response
acr2cdai	Change in CDAI by 6-month ACR response
acr2haq	HAQ change by 6-month ACR response
acr2eular	ACR to EULAR Conversion
eular2haq	HAQ change by 6-month EULAR Response
haq.lprog	Linear HAQ progression rates
haq.lcgm	Latent Class Growth Model (LCGM) for HAQ progression
ttd.eular ttd.da ttd.all	Time to treatment discontinuation parameters
ttsi	Time to serious infection parameters
lifetable.female lifetable.male	US Lifetables 2011
mort.or	Mortality odds ratios by patient characteristics
mort.hr.haqdif	Mortality hazard ratio for change in HAQ score
tx.cost	Treatment costs
hosp.cost	Hospitalization costs
mgmt.cost	Cost of general management of RA
pain	Correlation between HAQ and pain
utility.mixture	Mixture model utility mapping
utility.wailoo	Wailoo (2006) utility mapping
utility.tx.attr	Treatment attributes
Patient population
sample_pop()	Sample a patient population
get_input_data()	Input data for simulation
Sample parameters for PSA
sample_pars()	Sample parameters
sample_uniforms()	Sample from uniform distributions
sample_normals()	Sample from normal distributions
sample_mvnorm()	Sample from a multivariate normal distribution
sample_dirichlets()	Sample matrices using a Dirichlet distribution
sample_gammas()	Sample from gamma distributions
sample_survpars()	Sample survival parameters
sample_pars_utility_mixture()	Utility mixture model parameters
Model structure
select_model_structures()	Select model structures
Individual patient simulation
sim_iviRA()	The IVI-RA simulation
Other useful functions
sim_dhaq6()	Simulate change in HAQ at 6 months
sim_utility_mixture() sim_utility_wailoo() sim_qalys()	Simulate utility after IPS
sim_survtime()	Simulate survival time for RA patients